FLACSO Argentina, in order to achieve its academic and regional integration objectives, over the last years has stimulated the work by associating with a wide variety of institutions, not only from the public and the private sector but also from the third sector. Moreover, this network has been extended within the country as well as with foreign institutions. This wide variety of agreements and exchanges allows mutual learning and the creation of bonds with the society and its institutions. Some of the institutions with whom FLACSO is associated with are listed below:

Public and private universities of Argentina: National University of Litoral - Economics Sciences Department (Universidad Nacional del Litoral), National University of Rosario (Universidad Nacional de Rosario), University of Buenos Aires - several departments (Universidad de Buenos Aires), University of San Andres (Universidad de San Andrés),  National University of Tres de Febrero (Universidad Nacional de Tres de Febrero), National University Institute of Art (Instituto Universitario Nacional de Arte - IUNA), National University of Quilmes (Universidad Nacional de Quilmes), Torcuato Di Tella University (Universidad Torcuato Di Tella).

Foreign universities or academic institutions: Tecnical University of Loja - Ecuador (Universidad Técnica Particular de Loja), University of Barcelona - Spain (Universidad de Barcelona), Autonomous University of Madrid - Spain (Universidad Autónoma de Madrid), State University of Campinas - Brazil (Universidad Estadual de Campinas), Fondation Nationale des Sciences Politiques (Sciences Po, France), Florida International University, Georgetown University.

Research institutes in Argentina: Economics and Social Development Institute (Instituto de Desarrollo Económico y Social - IDES), Social Studies Institute (Instituto de Altos Estudios Sociales - IDAES), State and Society Studies Center (Centro de Estudios de Estado y Sociedad - CEDES).

Public Government Bodies: Human Rights Secretariat; Education, Science and Technology Ministry; Federal Planning, Public Investments and Services Ministry; Surveys and Statistics Institute. The Honorable National Senate, among others. The Honorable Chamber of Senators, the Legislature of the City of Buenos Aires.

Foundations, Non-profit Organizations, Non-governmental Organizations (NGOs), Center of Implementation of Public Policies for Equity and Development (Centro de Implementación de las Políticas Públicas para la Equidad y el Desarrollo - CIPPEC), Ford Foundation, Carolina Foundation, Repsol YPF Foundation.

Furthermore, FLACSO develops a variety of Research Projects which promote team work among researchers from different countries with the aim to generate new knowledge from a regional perspective which allows the integration of knowledge and local experience concerning the treatment of problems that Latin America faces as a region.